Words similar to indel

Example sentences for: indel

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Since our algorithms are based on searching for clusters of common sites, microsatellites can score high, but tend not to be functional (for an exception see [ 9 ] ). We used the Tandem Repeat Remover [ 17 ] to mask microsatellites, with scoring parameters (2 5 5 75 20 20 500) (respectively; match, mismatch, indel scores; percentage priors for mismatch and indels; minimum score, and maximum length) which are as promiscuous as possible yet did not detect appreciable microsatellites in random sequences.
(Except that for some Kir and KirBac sequences the PhiBlast approach predicted that the two residue indel near the beginning of S6 occurred within S6 instead of in the P-S6 loop.
The COMM domain [ 24], a rigid but mobile domain as originally defined with S. typhimurium TrpEb_1 [ 25], differs from the corresponding region of the TrpEb_2 subfamily by the presence of an indel.
Protein alignments were generated using the Clustal X program and checked manually [ 40 ] . SSU NA sequences were aligned using Clustal W as implemented by the OMIGA package and checked manually [ 41 42 ] . NA alignments of full-length moeZ sequences for indel analysis were aligned manually based on the Clustal X protein sequence alignment.
The results of the indel analysis also suggest that Ps-moeZ is more closely related to the mycobacteria moeZ sequences than to the cyanobacteria and proteobacteria moeZ sequences.