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Example sentences for: glimmerm
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Finally, alignment of protein sequence to genomic DNA cannot predict untranslated regions (UTRs), and the leading ab initio gene prediction programs (Genscan [ 11], GlimmerM [ 12], Genemark.HMM [ 13]) have great difficulty predicting UTRs; most of them predict only the coding portion of a transcript.
Using default parameters, GlimmerM frequently yielded a large number of overlapping predictions (competing gene models) and thus additional filtering of the initial prediction output was required.
ORF predictions of August 2000 were predicted from contig sequences available in August 2000, using GlimmerM software.
ORF predictions of October 2000 were predicted from contig sequences available in October 2000, using GlimmerM software.
As slight overprediction of ORFs is generally desirable for the purpose of expression array building, the post-prediction filtering of the GlimmerM output was modified with respect to the process used by the Malaria Genome Consortium [ 21].