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Example sentences for: ggtat

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After cloning and DNA sequencing, the KRC-selected sequence datasets were analyzed by the computer program Multiple Expectation Maximum for Motif Elicitation (MEME version 3.0) to generate sets of position specific scoring matrices (PSSMs) or motifs [ 30 ] . When the program was set to identify wider sequences (= 9 nucleotides) the PSSMs were homologous to Sb [ 29 ] , the κB motif [ 31 ] , and the canonical heptamer and nonamer elements of the RSS [ 32 ] . However, shortening the width of the motifs to 5 nucleotides, the target length for the C 2 H 2 zinc finger pairs of the tramtrack [ 33 ] , the ZAS-N dataset yielded two motifs, "GGTAT" and "T(T/C)TT(T/G)G" and the ZAS-C dataset yielded a single motif, "TGTGG".
One motif was an invariant "GGTAT" (Figure 10), and the other was "T(T/G)T(T/G)G (Figure 11).
Passes of MEME for pentameric motifs yielded homologous TG-rich sequences for the KRC/ZAS-N and KRC/ZAS-C datasets: T(T/G)T(T/G)G and GGTAT for KRC/ZAS-N, and TGTGG/T for KRC/ZAS-C.