Words similar to gapped
Example sentences for: gapped
How can you use “gapped” in a sentence? Here are some example sentences to help you improve your vocabulary:
We found that a 100-unit segment of the alignment (where a unit is either a single paired or gapped nucleotide) containing no more than 13% gaps or 15% mismatches, was sufficient to identify all known miRNA genes within their respective genomic neighborhoods, with a minimum of additionally selected sequences.
A 100-unit window (where a unit is either an aligned or a gapped nucleotide) was advanced across the AVID alignment files by single units.
The Non-redundant Protein Sequence Database [ 21], the Expressed Sequence Tags Database (NCBI) [ 31] and the individual protein sequence databases of completely and partially sequenced genomes [ 32] were searched using the gapped version of the BLAST programs (BLASTPGP for proteins and TBLASTNGP for translating searches of nucleotide databases) [ 22].
The sequences of all proteins encoded in the analyzed genomes were compared to each other using the gapped BLASTP program [ 37 ] . Reciprocal, genome-specific BeTs were collected at different expectation (E) value cutoffs (0.
If the local alignment with synaptojanin is gapped to align these residues in the three proteins (Table 2, gapped), the RMSD for the two sections separated by the gap is much lower than that if one tries to align the whole ungapped segment.