Example sentences for: gapped

How can you use “gapped” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • By using the gapped GPPP method, we were able to detect 176 functionally related gene clusters containing 738 genes.

  • A 100-unit window (where a unit is either an aligned or a gapped nucleotide) was advanced across the AVID alignment files by single units.

  • Sequence searches of the non-redundant (NR) and the unfinished genomes databases, were done using the gapped BLAST and PSI-BLAST programs [ 38 ] . Iterative PSI-BLAST searches used for in-depth sequence analysis were done with the profile inclusion cutoff expectation value (E value) set at 0.1.

  • We found that a 100-unit segment of the alignment (where a unit is either a single paired or gapped nucleotide) containing no more than 13% gaps or 15% mismatches, was sufficient to identify all known miRNA genes within their respective genomic neighborhoods, with a minimum of additionally selected sequences.

  • The list of possible functionally linked gene clusters reported by both the gapped and non-gapped versions of GPPP can be accessed at [ 23].


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