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Example sentences for: fulgidus
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An analysis of the putative functional assignments of the QuartOPs that grouped Halobacterium sp. with the mesophilic bacteria is given in Table 4. To assess which of these categories have an increased percentage of QuartOPs as compared to distribution of ORFs within the genome, we also calculated the distributions of ORFs among functional categories in the Halobacterium sp. and A. fulgidus genomes.
These are also the categories in which Halobacterium sp. shows many more OuartOPs in support of topology 3 than A. fulgidus .
This classic TS is readily identifiable in many (but not all) bacteria, eukaryotes and three archaeal species, Archaeoglobus fulgidus, M. jannaschii, and M. thermoautotrophicum (COG0207).
Neisseria meningitidis (Neime), Pasteurella multocida (Pasmu), Psudomonas aeruginosa (Pseae), Rickettsia prowazekii (Ricpr), Staphyloccocus aureus (Staau), Streptococcus pyogenes (Strpy), Synechocystis PCC6803 (SynPC), Thermotoga maritima (Thema), Treponema pallidum (Trepa), Ureaplasma urealyticum (Ureur), Vibrio cholerae (Vibch), Xylella fastidiosa (Xylfa), and ten archaea: Aeropyrum pernix (Aerpe), Archaeoglobus fulgidus (Arcfu), Halobacterium sp. (Halsp), Methanobacterium thermoautotrophicum (Metth), Methanococcus jannaschii (Metja), Pyrococcus horikoshii (Pyrho), Pyrococcus abyssi (Pyrab), Sulfolobus solfataricus (Sulso), Thermoplasma acidophilum (Theac), Thermoplasma volcanium (Thevo).
Sequences were the APE1 protein from human, bovine, monkey, rat murine, Arabidopsis thaliana (Mouse-ear cress) Dictyostelium discoideum (Slime mold), Schizosaccharomyces pombe (Fission yeast), Caenorhabditis elegans , Saccharomyces cerevisiae (Baker's yeast), Thermoplasma acidophilum , Neisseria meningitidis . Methanobacterium thermoautotrophicum , Leishmania major , Trypanosoma cruzi , Coxiella burnetii ; the Rrp1 protein of Drosophilia ; exonuclease III from E. coli , Bacillus subtilis , Mycobacterium tuberculosis , Haemophilus influenzae , Salmonella typhimurium , Helicobacter pylori , Rickettsia prowazekii , Archaeoglobus fulgidus , Actinobacillus actinomycetemcomitans , Streptomyces coelicolor , Synechocystis sp.
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