Words similar to fulgidus
Example sentences for: fulgidus
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The genome of the mesophilic Halobacterium sp. contains many genes that group with the orthologs from mesophilic bacteria, whereas the majority of genes from the thermophilic archaeon Archaeoglobus fulgidus group with the orthologs from the extremely thermophilic bacteria.
To test for the possibility that long branch attraction [ 48 ] might be the reason for the strong support of Halobacterium sp. grouping with Synechocystis sp., we repeated the analysis replacing the Halobacterium sp. genome with that from Archaeoglobus fulgidus , another archaeon.
We selected eight genomes from archaea: Archaeoglobus fulgidus (AF), Aeropyrum pernix K1 (AP), Halobacterium sp. (HS), Methanococcus jannaschii (MJ), Methanobacterium thermoautotrophicum (MT), Pyrococcus abyssi (PA), Pyrococcus horikoshii (PH), and Thermoplasma acidophilum (TA); 14 genomes from bacteria: Aquifex aeolicus (AA), Borrelia burgdorferi (BB), Bacillus subtilis (BS), Chlamydia pneumoniae strain AR39 (CP), Chlamydia trachomatis (CT), E. coli strain K12 (EC), Haemophilus influenzae (HI), Helicobacter pylori strain 26695 (HP), Mycobacterium tuberculosis (MyTu), Mycoplasma genitalium (MG), Mycoplasma pneumoniae (MP), Rickettsia prowazekii (RP), Synechocystis sp. (SS), and Treponema pallidum (TP); four genomes from eukaryotes: Saccharomyces cerevisiae (SC), D. melanogaster (DM), C. elegans (CE), and Arabidopsis thaliana (AT).
Often translational coupling exists, as seen in Figure 7for P. furiosus, P. abyssi, M. thermoautotrophicum, T. volcanium, Archaeoglobus fulgidus and T. maritima.
An analysis of the putative functional assignments of the QuartOPs that grouped Halobacterium sp. with the mesophilic bacteria is given in Table 4. To assess which of these categories have an increased percentage of QuartOPs as compared to distribution of ORFs within the genome, we also calculated the distributions of ORFs among functional categories in the Halobacterium sp. and A. fulgidus genomes.
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