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Example sentences for: fca

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To compute our FCA on gene codon composition, we used absolute codon frequencies, without considering the three stop codons or the ATG and TGG codons, which are not degenerate.
Such a matrix can be used in a FCA, which is a multivariate analysis often used to study codon usage [ 2 5 14 37 38 ] . It allows one to calculate the position of sequences in a multidimensional space with respect to their codon usage and to give a graphical representation of the dimensions maximizing their dispersion.
However, both the FCA and the G+C content analyses suggest that IS and phages are less biased in their base composition than other LTGs.
We used ADE-4 software package [ 39 ] to perform the FCA presented in this study.
Figure 5shows the first two axes of an FCA performed on the four species.