Words similar to fastgroup

Example sentences for: fastgroup

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To make trimming as flexible as possible, FastGroup can trim sequences in three ways: 1) a user-specified number of bases from the 5' or 3' ends can be used (the rest of the sequence is discarded), 2) sequence 5' or 3' of a defined site can be removed, or 3) sequence with ambiguous bases (i.e.
While FastGroup is optimized to dereplicate libraries of 16S rDNA sequences, it can easily be adapted to dereplicate any protein or DNA sequence library.
However, results can also be visualized in FastGroup by having the program display the sequences from the 3' end and looking at the group_seqs.txt output file.
With a large data set, it may be desirable to speed up the FastGroup analysis, possibly by using only part of the input sequence during grouping.
When FastGroup is initiated, the first sequence in the library is trimmed and placed in a new group, g1.