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Example sentences for: dk

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[ 45 ] http://www.cbs.dtu.dk/~gorodkin/appl/slogo.htmlto derive the sequence logos and the information content of individual sites was calculated according to the expression of Hertz and Stormo [ 17 ] . Type 2 logos were drawn in which the height of the nucleotides in the sequence column represented their frequency in proportion to their expected frequency.
An alignment output from this source was used to create a dendrogram using TreeTop [ 45 ] with PHYLIP output (default parameters) at a node of the European Molecular Biology Network http://www.genebee.msu.su [ 47 ] . Potential phosphorylation sites were identified using NetPhos 2.0 http://www.cbs.dtu.dk/services/NetPhos [ 48 ] . After alignment with CLUSTAL W, identical and similar amino acids in Figure 3were identified using MacBoxshade 2.15 http://www.isrec.isb-sib.ch/ftp-server/boxshade/MacBoxshade.
N-linked glycosylation sites were predicted using the Center for Biological Sequence Analysis NetNGlyc 1.0 Prediction Server http://www.cbs.dtu.dk/services/NetNGlyc/.
For example, the P/J strain Tlr4 gene exhibits 11 mutations the distinguish it from the most common haplotype, six of them specifying changes in the Tlr4 amino-acid sequence; the SEA/GnJ strain differs by nine mutations, and the strains NZW/J and VM/Dk, which are identical to one another, differ from the most common haplotype at six sites.
DK conceived of the study, its design and coordination, participated in data analysis, and edited the manuscript.