Words similar to d-pssm

Example sentences for: d-pssm

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The hybrid-fold-recognition method, which combines sequence-profile analysis with alignment-based secondary-structure prediction [ 22] and the 3D-PSSM method [ 23] both suggested a likely α-amylase-like triosephosphate isomerase (TIM) barrel structure for this protein family.
Sequence-structure threading was performed using the hybrid fold-prediction method, which combines multiple-alignment information with secondary-structure prediction [ 42], and the 3D-PSSM method [ 43].
The 3D-Genomics database [ 12 ] uses SCOP domain PSSMs from 3D-PSSM [ 13 ] . Gene3D uses the CATH domain classification to annotate genes and genomes [ 14 ] .
The sequence-structure threading with the 3D-PSSM method recovered the APSES domain structure (PDB 1bm8/1bm1) as the best hit for the Bro-N domain, albeit with statistically insignificant E-values.
Sequence-structure threading was carried out using the combined-fold-prediction algorithm [ 22] or the 3D-PSSM algorithm based on the use of a three-dimensional position-specific scoring matrix [ 23].