Words similar to contig
Example sentences for: contig
How can you use “contig” in a sentence? Here are some example sentences to help you improve your vocabulary:
Each clone was named according to its position in the original 96-well plate, for example, clone 1030 came from position 30 in plate 1. Vector sequences were first scanned in batch mode for the presence of vector-derived sequences using Contig Express and these sequences were trimmed before proceeding.
Of 83 RPCI-11 clones in our contigs, 63 were present in the FPC database; 1 was not placed on a contig, 6 were placed on contigs of different chromosomes, and 56 in three chromosome 16 contigs, ctg16020, ctg16021 and ctg16024.
Using PCR with combinations of primers designed from these PEVE sequences and the genome-walking approach, several overlapping fragments constituting the 7.6 kb contig were isolated.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
The next challenge - sequence completion and verification - requires the closing of the gaps between contigs, isolation and characterization of centromeric and telomeric regions that are poorly represented in libraries, and verification of contig assembly.
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