Example sentences for: consed

How can you use “consed” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • All contigs with more than three members were examined again in Consed to eliminate additional misassemblies not resolved by the initial screens.

  • With an estimated gap size, LBNL used one of five gap-filling methods to determine their sequence: first, gaps less than 500 bp were sequenced using custom primers designed by consed and a 3-kb or 10-kb plasmid as DNA template; second, gaps between 500 bp and 2.5 kb that were spanned by a 3-kb clone were completed by sequencing the 3-kb clone using a transposon-based sequencing strategy, described below; third, gaps between 2.5 kb and 10 kb that were spanned by a 10-kb clone were completed by sequencing the 10-kb clone using a transposon-mediated sequencing strategy; fourth, gaps larger than 10 kb were completed by sequentially sequencing multiple 10-kb clones to walk across the gap.

  • All contigs with more than three member ESTs was screened for misassemblies using Consed tools and newly written scripts.

  • Although Phrap is a program intended for genome assembly, it has been applied previously to ESTs with modifications [ 90 ] . To determine initial assembly quality, the largest contigs were inspected using the assembly viewer Consed [ 91 ] . Misassemblies bringing unrelated ESTs together into giant contigs usually resulted from the alignment of long poly(A) tails.

  • If Autofinish could not design primers, custom primers were designed manually using consed.


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