Words similar to consed

Example sentences for: consed

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Although Phrap is a program intended for genome assembly, it has been applied previously to ESTs with modifications [ 90 ] . To determine initial assembly quality, the largest contigs were inspected using the assembly viewer Consed [ 91 ] . Misassemblies bringing unrelated ESTs together into giant contigs usually resulted from the alignment of long poly(A) tails.
Consed - alpha (obtained from David Gordon, University of Washington Genome Center) was used to visualize reads and mutations.
Contigs flagged for possible misassembly were manually edited in Consed and potentially chimeric ESTs and other suspect ESTs were identified and removed from the pool of traces.
Quality scores and consensus sequence from the BAC assemblies were exported from Consed.
With an estimated gap size, LBNL used one of five gap-filling methods to determine their sequence: first, gaps less than 500 bp were sequenced using custom primers designed by consed and a 3-kb or 10-kb plasmid as DNA template; second, gaps between 500 bp and 2.5 kb that were spanned by a 3-kb clone were completed by sequencing the 3-kb clone using a transposon-based sequencing strategy, described below; third, gaps between 2.5 kb and 10 kb that were spanned by a 10-kb clone were completed by sequencing the 10-kb clone using a transposon-mediated sequencing strategy; fourth, gaps larger than 10 kb were completed by sequentially sequencing multiple 10-kb clones to walk across the gap.