Words similar to concatenated

Example sentences for: concatenated

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Current approaches to full-insert sequencing of cDNA clones include concatenated cDNA sequencing [ 3], primer walking [ 4], and strategies using transposon insertion to create priming sites [ 5, 6, 7, 8, 9].
Similar tree topologies were obtained when the ribosomal protein data were analyzed using the neighbor-joining method and when bacterial phylogeny was analyzed separately by using a concatenated alignments of 51 ribosomal proteins shared by all bacteria (data not shown).
The sequences were concatenated in batches of 96 into a text file using FASTA format and submitted for a batch BLASTN search using the interface program BLASTCL3.
Posterior probabilities of concatenated files were computed using Bayesian inference [ 32 ] (Jones model with gamma estimated from data; 10,000 generations; 4 chains with temp = 0.2).
Pairwise evolutionary distances between the sequences in concatenated alignments were calculated using the Dayhoff PAM model as implemented in the PROTDIST program of the PHYLIP package [ 44 ] . A distance tree was constructed from the resulting distance matrix by using the least-square [ 46 ] method as implemented in the FITCH program of PHYLIP [ 44 ] . The maximum likelihood tree was constructed with the JTT-F model of amino acid substitutions [ 47 ] , as implemented in the ProtML program of the MOLPHY package [ 48 ] , by optimizing the least squares tree with local rearrangements.