Words similar to atoms
Example sentences for: atoms
How can you use “atoms” in a sentence? Here are some example sentences to help you improve your vocabulary:
The residues in the MIDAS motifs lie on three closely apposed loops located on the upper edge of the β-sheet, where they form the metal-binding site, with oxygen atoms in the aspartate, serine and threonine residues coordinating the metal ion [ 9 ] . In integrin α2β1, which is a collagen receptor, the metal-binding site also binds the collagen ligand through the conserved glutamate in a GFOGER motif (O = hydroxyproline) completing the coordination sphere of the metal [ 28 ] . In vivo, the binding of collagen at this site appears to be regulated through a conformational shift in which the loops forming the MIDAS site change from a closed to an open conformation [ 29 30 31 ] . Other proteins containing a domain with all three MIDAS motifs include the D-subunit of magnesium chelatase [ 32 ] , Ca-activated chloride-channel protein [ 33 34 ] , nitrate reductase (accession AAC79447), and the D subunit of nitric oxide reductase (accession AAC45374).
Each node is given a weight based on the degree of the interaction between its side chain atoms and the local main chain atoms.
Today we are accustomed to thinking of elements and atoms as one and the same; to the Greeks, atoms and elements represented efforts by different philosophic schools to explain the discrepancy between appearances and the true nature of things.
Additionally, a hydrogen bond between the pyridine nitrogen of nicotine and indole nitrogen of Trp182 is possible (the two atoms are 3.4 A apart), but the bond angle is not optimal (70 degrees with the plane of the aromatic side-chain).
For 23 of these proteins, we produced models ranging from 1.0 to 6.0 Å root mean square deviation (RMSD) for the C α atoms between the model and the corresponding experimental structure for all or large parts of the protein, with model accuracies scaling fairly linearly with respect to sequence identity (i.e.
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