Words similar to atom-based

Example sentences for: atom-based

How can you use “atom-based” in a sentence? Here are some example sentences to help you improve your vocabulary:

CASP4 demonstrated further improvement in our methodologies in both comparative modelling and ab initio prediction [ 26 ] . Our approaches combine a Monte Carlo procedure, simulated annealing, genetic algorithms, graph theory, and semi-exhaustive searches with move sets consisting of fragments and discrete state models, and scoring functions consisting of all atom-based pairwise functions, hydrophobicity indices, secondary structure preferences, and hydrogen bonding.
One hundred steps of energy minimization of the protein-ligand-water complex were initially performed, followed by 10 ps MD simulation at 300 K, with an atom-based shifted distance-dependent dielectric constant, ε = 4r; a switch function on van der Waals interaction, and a time step of 1 femtosecond (fs).