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Example sentences for: alkb

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In addition to the AlkB orthologs, these searches retrieved from the database, with statistically significant expectation (e) values, several other more distant homologs of AlkB, including uncharacterized eukaryotic proteins and fragments of the polyproteins of plant RNA viruses from the caria-, tricho- and potexvirus families.
The Non-redundant Protein Sequence Database (NCBI) [ 21] was searched using the PSI-BLAST program [ 22] run to convergence, with a profile-inclusion threshold of 0.01 and AlkB protein sequences from various organisms as queries.
For example, the insert between the fifth and sixth strand in AlkB is predicted to contain an extra strand, whereas in the small-molecule dioxygenase (IPNS/ethylene-forming enzyme (EFE)) family, the same region forms (or is predicted to form) a short helix (Figures 1, 3).
oleovorans protein also named AlkB.
In particular, we propose a specific mechanism of action in DNA repair, and possibly in RNA modification, for the AlkB protein and its homologs.