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Example sentences for: ahab

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Therefore, Ahab generalizes the motif model to positional weightmatrices.
The weight matrix match is a surrogate for the energetic preference of a transcription factor for a particular sequence, and Ahab models the competition of several factors and their binding energies for a stretch of DNA (a module).
Using these 6 weight matrices as input, Ahab finds 63 highly significant modules genome-wide (Table 4, additional File 5).
Ahab uses a local Markov model of order q for background sequence, that is, a single base n at site j is segmented with probability p
Both Ahab and Gibbs, use counts of short strings or single bases, within the window of interest to compute the significance of longer motifs.