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Example sentences for: aeolicus
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Data from the following species were assembled into presumptive orthology groups (hereafter, proteins) and aligned [ 36 ] : Aquifex aeolicus , Bacillus subtilis , Borrelia burgdorferi , Chlamydia trachomatis , Escherichia coli , Haemophilus influenzae , Helicobacter pylori, Mycobacterium tuberculosis, Mycoplasma genitalium, Mycoplasma pneumoniae , Rickettsia prowazekii, Synechocystis sp., and Treponema pallidum (Eubacteria), Archaeoglobus fulgidus, Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Pyrococcus abyssi , and P. horikoshii (Archaebacteria: Euryarchaeota), and Arabidopsis thaliana, Caenorhabditis elegans, Dictyostelium discoideum, Drosophila melanogaster, Gallus gallus, Homo sapiens, Mus musculus, Oryza saticva, Plasmodium falciparum, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Trypanosoma sp. , and Xenopus laevis (Eukaryota).
The sequences of the proteins encoded in complete genomes were extracted from the Genome division of the Entrez retrieval system [ 34 ] . The analyzed genomes included those of 30 bacteria: Aquifex aeolicus (Aquae), Bacillus halodurans (Bacha), Bacillus subtilis (Bacsu), Borrelia burgdorferi (Borbu), Buchnera sp. (Bucsp), Campylobacter jejunii (Camje), Caulobacter crescentus (Caucr), Chlamydia trachomatis (Chltr), Chlamydophila pneumoniae (Chlpn), Deinococcus radiodurans (Deira), Escherichia coli (Escco), Haemophilus influenzae (Haein), Helicobacter pylori (Helpy), Lactococcus lactis (Lacla), Mesorhizobium loti (Meslo), Mycoplasma genitalium (Mycge), Mycoplasma pneumoniae (Mycpn), Mycobacterium tuberculosis (Myctu),
The bacterial side of this tree consists of three major clades: i) proteobacterial clade that, in addition to bona fide Proteobacteria, includes also A. aeolicus, M. tuberculosis, D. radiodurans, and Synechocystis sp, ii) Gram-positive clade that additionally includes T. maritima, and iii) an unexpected clade that unites spirochetes and chlamydia.
To test if this association was specific for Synechocystis sp., we repeated the analyses replacing Synechocystis sp. with Bacillus subtilis . The result was qualitatively the same: at the p > .99 level 53 QuartOPs supported grouping Bacillus subtilis with Halobacterium sp., and only 27 supported grouping Aquifex aeolicus with Halobacterium sp. (Fig.
i) bacteria with large genomes, namely E. coli, B. subtilis, Synechocystis sp., Deinococcus radiodurans and Mycobacterium tuberculosis, and free-living bacteria with small genomes, A. aeolicus and T. maritima
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