Example sentences for: paup

How can you use “paup” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Simulation studies have shown that ML is typically more accurate and robust than MP [ 81 82 ] . Thus an ML analysis of the data was conducted by employing an heuristic search in PAUP* using TBR branch swapping on a starting tree based on neighbor joining, ACCTRAN, and STEEPEST DESCENT under the TrN+G DNA substitution model [ 83 ] . This model was selected using a Hierarchical Likelihood Ratio Test (HLRT) in Modeltest version 3.06 [ 84 ] .

  • [ 19 ] . Significance of Incongruence Length Differences (ILDs [ 20 21 ] ) were calculated using the Partition Homogeneity Option in PAUP 4.0b7 [ 14 ] . Partitioned Bremer supports for the inversion partition and the DNA partition were calculated using the approaches outlined in Baker et al.

  • The alignment was saved as a PAUP file and the phylogenetic analysis was done using PAUP 4.0b4a (PPC).

  • The alignment was done in Megalign by the CLUSTAL method and a phylogenetic tree was generated using the Bootstrap (100 replicates) method with a heuristic search of the PAUP 4.0b6 program (Figure 3).

  • Phylogenetic analysis was performed by using the PAUP 4.0 program [ 39 ] , with 1000 bootstrap replicates performed to assess the reliability of the tree topology.


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