Words similar to paup

Example sentences for: paup

How can you use “paup” in a sentence? Here are some example sentences to help you improve your vocabulary:

Phylogenetic trees were generated using PAUP 4.0b7 [ 14 ] . In order to assess the relative contribution of chromosomal inversion and DNA sequence data we placed our analysis in a simultaneous analysis framework [ 15 16 17 ] . Bootstrap values were computed using PAUP 4.0b7.
Phylogenic trees were inferred using PAUP 4.0 [ 44 ] . Three data sets were analyzed: those portions of the NA alignment coding for the ThiF domains of the MoeZ conceptual proteins, the alignment of the complete MoeZ sequences, and the alignment of the full length 16S rDNA (SSU) sequences.
The alignment was done in Megalign by the CLUSTAL method and a phylogenetic tree was generated using the Bootstrap (100 replicates) method with a heuristic search of the PAUP 4.0b6 program (Figure 3).
Microsoft-Word file of aligned data matrix used for phylogenetic analyses in PAUP*.
Simulation studies have shown that ML is typically more accurate and robust than MP [ 81 82 ] . Thus an ML analysis of the data was conducted by employing an heuristic search in PAUP* using TBR branch swapping on a starting tree based on neighbor joining, ACCTRAN, and STEEPEST DESCENT under the TrN+G DNA substitution model [ 83 ] . This model was selected using a Hierarchical Likelihood Ratio Test (HLRT) in Modeltest version 3.06 [ 84 ] .