Example sentences for: dayhoff

How can you use “dayhoff” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Many proteins belong to large families, as suggested by Dayhoff [ 1 ] . Such families are often composed of subfamilies related to each other by gene duplication events.

  • Phylogenetic trees were constructed by first generating a distance matrix using the PROTDIST program and the Dayhoff PAM model for amino-acid substitutions and employing this matrix for minimum evolution (least-square) tree building [ 30] using the FITCH program.

  • The distance matrix was obtained using Protdist with a Dayhoff Pam matrix.

  • 3. Maximum likelihood pairwise distance matrices are calculated for each of the x multiple alignments using a model of amino acid substitution (for example, BLOSUM [ 25 ] or Dayhoff PAM [ 26 ] ).

  • For all three possible unrooted tree topologies maximum-likelihood values and posterior probabilities were calculated using in-house JAVA programs that were written utilizing classes from the Phylogenetic Analysis Library version 1.0 [ 54 ] and parts of Vanilla package version 1.0 [ 54 ] . If not indicated otherwise, likelihood values were estimated using the automatically selected suitable substitution model (chosen from BLOSUM62, CPREV, Dayhoff, JTT, MTREV24, VT and WAG) with no ASRV.

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